PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461651.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 165aa    MW: 19163.1 Da    PI: 9.8862
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-071752340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++e+   +++a +++G++ W+++a+ +   Rt++++
   XP_016461651.1 17 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 52
                     5*****************99.********9.8999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-101162IPR009057Homeodomain-like
SMARTSM007177.1E-41462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-51758IPR009057Homeodomain-like
PfamPF002491.0E-61753IPR001005SANT/Myb domain
CDDcd001671.93E-51852No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKNSLRKRKA SDMIGPHWSE EDLTHFYQAY RKYGKDWEKV AAAVKPRTAE MVEALYIMHM  60
AYLSLPEGTA SAVGLIALIS DHYCYLLWPR CRTRFRNSSN GSRAWCRRNH TPSVLGWSYQ  120
RVDGRPAVIV SFFFRTVIVR ASSRDYSHFF LCRPREGCCN EAPKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608701.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_009608703.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_009608704.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_009608705.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_009608706.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_009608707.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_009608708.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_009608709.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_016461650.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_016461651.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_016461652.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_016461653.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_016461654.11e-123PREDICTED: protein ALWAYS EARLY 3-like isoform X2
SwissprotQ6A3321e-32ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLK4DHJ03e-40K4DHJ0_SOLLC; Uncharacterized protein
STRINGSolyc12g098160.1.11e-39(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.28e-34DNA binding